Syllabus

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  • NIA2 (Neurons in Action, 2) Introductory Tutorial
  • NIA2 Membrane Tutorial
  • NIA2 Equilibrium Potential Tutorial
  • NIA2 Sodium Action Potential Tutorial
  • NIA2 Voltage Clamping a Patch Tutorial
  • Differential equations and basic concepts of numerical analysis of differential equations. Discretizing a continuous model (RC-circuit) with Euler's method. A Matlab primer.
  • Identifying an RC-circuit with time domain methods and an injected current. Two cell network of RC circuits with linear graded synapse. Phase plane analysis. Parameter estimation when model structure is wrong.
  • Multiple compartment modeling with active conductance. The model structures we will use for projects.
  • Maximum likelihood estimation, part I
  • Maximum likelihood estimation, part II
  • Maximum likelihood estimation, part III
  • Bayesian filtering and using my fitting software: PROJECT PROPOSAL ASSIGNED.
  • NIA2 The Passive Axon Tutorial
  • NIA2 The Unmyelinated Axon: PROJECT PROPOSALS DUE
  • NIA2 Sodium and Potassium Channel Kinetics Tutorial
  • NIA2 Axon Diameter Change
  • NIA2 Nonuniform Channel Densities
  • NEURON Programming (Several classes -- to be decided)
  • More NIA2 Tutorials (Several classes -- to be decided)